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Intron Name: Anas_platyrhynchos_platyrhynchos_4_15820676_15821315_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15820676 - 15821315

Intron Length:

640

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATATG

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTGCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TCTCTCTTCATC

Flanking Amino Acid:

LIFPVMYLNESVLIDEASAS

Intron Amino Acid Position:

417

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

84.2

33.9

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

81.1

0.7

0.8

73.1

37.3

Minor 5ss

38.7

-1.3

2.9

50.6

45.9

Minor BPS

56.4

0.18

1.7

66.76

39.6

Associated Gene:

Gene:

SCARB2

Ensembl Gene ID:

ENSAPLG00000009561

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024405

15801973 - 15823577

21605

ENSAPLT00000010020

15802862 - 15821683

18822