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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15821475_15823538_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15821475 - 15823538
Intron Length:
2064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
CCACATTTAACT
Flanking Amino Acid:
VCRSRGVSEESTEEERSPLI
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
89.1
0.88
0.6
84.4
23.4
Minor 5ss
36.1
-1.6
2.7
45.8
42.3
Minor BPS
56.2
0.27
1.6
67
43.6

Associated Gene:

Gene:
SCARB2
Ensembl Gene ID:
ENSAPLG00000009561
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024405
15801973 - 15823577
21605