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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15825579_15829022_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15825579 - 15829022
Intron Length:
3444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
CCTGCCTTATTT
Flanking Amino Acid:
AAGTGAANPTGAFGGFGTTT
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
75.9
0.58
1
76.9
37.3
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
57.7
0.32
1.8
70.91
46.7

Associated Gene:

Gene:
NUP54
Ensembl Gene ID:
ENSAPLG00000001063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001087
15825527 - 15837412
11886