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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15833334_15834480_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15833334 - 15834480
Intron Length:
1147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGGT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TTGTCCATACTT
Flanking Amino Acid:
VKQLLQNPPAGVDPIIWEQA
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
74.1
0.6
1
69
38.9
Major PPT
85.2
0.79
0.9
90.8
21.8
Minor 5ss
40.6
-1
3.2
55
44.5
Minor BPS
59.6
0.38
1.9
80.63
41.6

Associated Gene:

Gene:
NUP54
Ensembl Gene ID:
ENSAPLG00000001063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001087
15825527 - 15837412
11886