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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15834536_15835122_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15834536 - 15835122
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTATTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTGTAAGAAAT
Flanking Amino Acid:
QAKVDNPDPDKLIPVPMVGF
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.3
26.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
81.9
0.72
0.8
77.3
31.3
Minor 5ss
38
-1.4
3.3
49.4
41.3
Minor BPS
43.5
-0.4
2
68.23
41.9

Associated Gene:

Gene:
NUP54
Ensembl Gene ID:
ENSAPLG00000001063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001087
15825527 - 15837412
11886