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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15836358_15836736_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15836358 - 15836736
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTAATTTAAAC
Flanking Amino Acid:
CELNAPTQFKGRLNELMSQI
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.9
30.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
83.5
0.75
0.7
76.3
32.3
Minor 5ss
32
-2.1
2.8
42.5
44.3
Minor BPS
61.5
0.34
1.6
73.65
36.5

Associated Gene:

Gene:
NUP54
Ensembl Gene ID:
ENSAPLG00000001063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001087
15825527 - 15837412
11886