About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15836848_15837165_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15836848 - 15837165
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
AAAATACCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTTTTTTGAAAA
Flanking Amino Acid:
DADLLREIKQHLKQQQEGLS
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
62
0.27
1
52.8
41.7
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
59.3
0.29
1.5
69.97
35.7

Associated Gene:

Gene:
NUP54
Ensembl Gene ID:
ENSAPLG00000001063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001087
15825527 - 15837412
11886