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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15839607_15839867_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15839607 - 15839867
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGAAT
U12 Branch Point Sequence:
ATGGGTAGAAAG
Flanking Amino Acid:
DLAMEQRSQERIQSSLLEVI
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
59.5
0.24
1.5
69.7
44.2
Major PPT
84.4
0.77
0.8
81.2
36.5
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
35.2
-1.2
1.9
36.43
39.2

Associated Gene:

Gene:
PPEF2
Ensembl Gene ID:
ENSAPLG00000016436
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017154
15838996 - 15854161
15166