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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15840032_15840827_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15840032 - 15840827
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTCTCCTTACAG
Flanking Amino Acid:
AFKAYDKDNTGRITLSNWAT
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
86.1
0.81
0.7
80
25.5
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
62.1
0.24
1.8
68.4
44.9

Associated Gene:

Gene:
PPEF2
Ensembl Gene ID:
ENSAPLG00000016436
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017154
15838996 - 15854161
15166