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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15842514_15843714_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15842514 - 15843714
Intron Length:
1201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CCAATTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
ACTTTTCCAATT
Flanking Amino Acid:
CWTRQEEWKQILDILWSDPM
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
81.3
32.8
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
76.5
0.6
0.9
72.9
37.1
Minor 5ss
29
-2.4
3.2
40.6
45.6
Minor BPS
47.9
-0
1.8
66.41
39

Associated Gene:

Gene:
PPEF2
Ensembl Gene ID:
ENSAPLG00000016436
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017154
15838996 - 15854161
15166