About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15844990_15845080_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15844990 - 15845080
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAACA
5'SS Class:
strong_major
3'SS Sequence:
CCTGCCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
GATGCTTCATCT
Flanking Amino Acid:
FAKEVMQKYKVHGKKILKMI
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
36
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
71
0.47
0.8
61.2
35
Minor 5ss
32.4
-2
3.1
40.9
45.1
Minor BPS
48
-0
1.9
66.07
44.4

Associated Gene:

Gene:
PPEF2
Ensembl Gene ID:
ENSAPLG00000016436
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017154
15838996 - 15854161
15166