Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15845853_15847005_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15845853 - 15847005

Intron Length:

1153

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTACGTCTG

5'SS Class:

major

3'SS Sequence:

TTGTGCCTGTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTAAAA

U12 Branch Point Sequence:

CATACTGTGACT

Flanking Amino Acid:

TCYSEEVTVCGDLHGQLDDL

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.8

0.61

1.1

64.2

47.3

Major BPS

55.4

0.13

1.2

65.3

38.6

Major PPT

67.2

0.39

66.6

40.6

Minor 5ss

37.2

-1.4

3.2

50.4

45.9

Minor BPS

48.8

-0

2.1

68.24

Associated Gene:

Gene:

PPEF2

Ensembl Gene ID:

ENSAPLG00000016436

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017154

15838996 - 15854161

15166