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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15847121_15848146_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15847121 - 15848146
Intron Length:
1026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTAGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAG
U12 Branch Point Sequence:
AGAGCTTTAAGT
Flanking Amino Acid:
ALLEAFKQKQQLHARYVLNL
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
79.7
33.7
Major BPS
63.3
0.33
1.6
73.3
39.1
Major PPT
77.7
0.62
0.8
75.1
28.5
Minor 5ss
38.5
-1.3
3.3
52.3
38.8
Minor BPS
54.6
0.22
1.7
67.65
43.2

Associated Gene:

Gene:
PPEF2
Ensembl Gene ID:
ENSAPLG00000016436
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017154
15838996 - 15854161
15166