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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15849033_15850098_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15849033 - 15850098
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TATCTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GGCTTTGTATCT
Flanking Amino Acid:
EYACEQDQIKLHNFFSYLMD
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
86.4
0.82
0.7
81.1
30.4
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
44.2
-0.3
2.1
60.19
43.9

Associated Gene:

Gene:
PPEF2
Ensembl Gene ID:
ENSAPLG00000016436
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017154
15838996 - 15854161
15166