About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15862305_15863271_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15862305 - 15863271
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCCCTACCA
Flanking Amino Acid:
QVLSVKPVLNDNTVYTTVMS
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
84.6
33.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.4
0.71
0.8
75
34.6
Minor 5ss
42.9
-0.8
2.9
57
41.2
Minor BPS
67
0.53
2
84.22
35.9

Associated Gene:

Gene:
NAAA
Ensembl Gene ID:
ENSAPLG00000016393
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017111
15862223 - 15872161
9939