About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15863301_15863836_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15863301 - 15863836
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTCACCGAAAT
Flanking Amino Acid:
QNINFDTLFQVLSVKPVLND
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78.1
0.63
0.9
72.5
37.1
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
47.4
-0.1
2
74.43
41

Associated Gene:

Gene:
NAAA
Ensembl Gene ID:
ENSAPLG00000016393
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017111
15862223 - 15872161
9939