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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15863904_15864488_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15863904 - 15864488
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CTGTGTTTAATG
Flanking Amino Acid:
WTTPPPFDDRRTPAMKALNA
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
79
0.65
0.8
73
32
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
54.2
-0
1.9
58.09
44.8

Associated Gene:

Gene:
NAAA
Ensembl Gene ID:
ENSAPLG00000016393
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017111
15862223 - 15872161
9939