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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15864552_15865384_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15864552 - 15865384
Intron Length:
833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TGTTACATGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGTTACATGACA
Flanking Amino Acid:
DLWPLDPLSGAWFRVETNYD
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.3
71.6
40.2
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
67.8
0.4
1.1
62.4
42.9
Minor 5ss
37
-1.5
2.6
39.4
38.9
Minor BPS
58.1
0.25
1.8
73.84
37

Associated Gene:

Gene:
NAAA
Ensembl Gene ID:
ENSAPLG00000016393
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017111
15862223 - 15872161
9939