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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15866977_15869149_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15866977 - 15869149
Intron Length:
2173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGCAA
U12 Branch Point Sequence:
TGTGCAATAGTT
Flanking Amino Acid:
HKFTVSGDERAGGSWWENAI
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
94.4
1
0.6
87.9
29.4
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
44.8
-0.3
2.1
67.08
43.5

Associated Gene:

Gene:
NAAA
Ensembl Gene ID:
ENSAPLG00000016393
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017111
15862223 - 15872161
9939