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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15870129_15871488_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15870129 - 15871488
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
VLLNFAYESTAFCTSIVAQD
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.3
66.7
39.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
33.9
-1.8
3.2
39
39.9
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
NAAA
Ensembl Gene ID:
ENSAPLG00000016393
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017111
15862223 - 15872161
9939