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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15874053_15877140_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15874053 - 15877140
Intron Length:
3088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AATACCTGAATA
Flanking Amino Acid:
KNKRSFREKQLALRDALLKK
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.1
81.6
33.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
84.6
0.78
0.8
81.9
34
Minor 5ss
49.4
-0
2.9
73.9
42.6
Minor BPS
63.3
0.41
1.4
69.29
36.3

Associated Gene:

Gene:
SDAD1
Ensembl Gene ID:
ENSAPLG00000016271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017003
15873488 - 15891147
17660