About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15877303_15877697_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15877303 - 15877697
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGAAC
5'SS Class:
major
3'SS Sequence:
TTGTCTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CCTCTCTTATTA
Flanking Amino Acid:
DKETRLATAMAGKTDRKEFV
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
70.9
34.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
77
0.61
0.9
69.7
41.5
Minor 5ss
27.3
-2.6
3
30.7
36.9
Minor BPS
52.4
0.07
1.6
59.59
41.1

Associated Gene:

Gene:
SDAD1
Ensembl Gene ID:
ENSAPLG00000016271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017003
15873488 - 15891147
17660