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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15877783_15878317_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15877783 - 15878317
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGTGCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTGGAT
U12 Branch Point Sequence:
TTCTGTTGGATT
Flanking Amino Acid:
NIEIDDEEESRGELLSLRDI
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.5
39.9
Major BPS
53.7
0.09
1.6
57.1
49.4
Major PPT
65.5
0.35
1
61.1
40.1
Minor 5ss
38.3
-1.3
3.4
56.2
48
Minor BPS
48.9
-0
1.9
70.85
41.1

Associated Gene:

Gene:
SDAD1
Ensembl Gene ID:
ENSAPLG00000016271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017003
15873488 - 15891147
17660