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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15879065_15880242_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15879065 - 15880242
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGCCTT
5'SS Class:
major
3'SS Sequence:
TTCCCTTGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGCAA
U12 Branch Point Sequence:
GTTCCCTTGAGC
Flanking Amino Acid:
EEEKGKNLEEDGWESASMSE
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.3
64.8
46.6
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
71.9
0.49
1
69.4
35.4
Minor 5ss
38.8
-1.3
3.4
56.6
47.6
Minor BPS
63.8
0.42
1.7
72.43
38.6

Associated Gene:

Gene:
SDAD1
Ensembl Gene ID:
ENSAPLG00000016271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017003
15873488 - 15891147
17660