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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15880376_15880739_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15880376 - 15880739
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TATTTACTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
CTTTATTTACTT
Flanking Amino Acid:
NPEMLQKKYRGKPTEASVEA
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
79
35.3
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
84.2
0.77
0.8
77.7
35.4
Minor 5ss
39.9
-1.1
3.4
54.7
43.6
Minor BPS
57
0.3
1.8
76.08
41.4

Associated Gene:

Gene:
SDAD1
Ensembl Gene ID:
ENSAPLG00000016271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017003
15873488 - 15891147
17660