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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15880817_15881204_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15880817 - 15881204
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAG
U12 Branch Point Sequence:
TTTACTGTACTT
Flanking Amino Acid:
LVHYKTHKNKNVMMSARTLI
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
59.7
0.24
1.5
57.6
41.3
Major PPT
73.3
0.52
1
70
41.4
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
48.9
-0
2.2
75.87
41.7

Associated Gene:

Gene:
SDAD1
Ensembl Gene ID:
ENSAPLG00000016271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017003
15873488 - 15891147
17660