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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15881303_15882398_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15881303 - 15882398
Intron Length:
1096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTGAATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTCACTTTGAAT
Flanking Amino Acid:
DKNSGEVMTVGINAIKEITA
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.8
38.7
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
77.5
0.62
0.9
74.6
40
Minor 5ss
33.5
-1.9
2.8
34.2
41.4
Minor BPS
62
0.46
1.5
76.79
39.9

Associated Gene:

Gene:
SDAD1
Ensembl Gene ID:
ENSAPLG00000016271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017003
15873488 - 15891147
17660