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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15882476_15882847_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15882476 - 15882847
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TCTTCCTTATTT
Flanking Amino Acid:
QASHQLVPPEIIQSVLMTIA
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.2
90.9
28.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
86.4
0.82
0.7
84.4
29.2
Minor 5ss
37.1
-1.5
2.8
51.6
44.9
Minor BPS
75.3
0.87
1.5
87.57
38.6

Associated Gene:

Gene:
SDAD1
Ensembl Gene ID:
ENSAPLG00000016271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017003
15873488 - 15891147
17660