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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15882907_15883477_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15882907 - 15883477
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTACTT
Flanking Amino Acid:
IQRFLQPHQREVTKILLFAA
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.9
0.9
0.7
82.1
34.6
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
64.3
0.53
1.5
79.64
37.1

Associated Gene:

Gene:
SDAD1
Ensembl Gene ID:
ENSAPLG00000016271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017003
15873488 - 15891147
17660