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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15883536_15884710_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15883536 - 15884710
Intron Length:
1175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATAAT
5'SS Class:
major
3'SS Sequence:
ATCTTTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTTGTTACAACT
Flanking Amino Acid:
LISRLVGIHELFLFNFYPFI
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
80.5
33.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.2
0.75
0.8
77.8
30.3
Minor 5ss
35.7
-1.6
3.1
50.7
45.8
Minor BPS
47.1
-0.1
1.9
68.07
43.3

Associated Gene:

Gene:
SDAD1
Ensembl Gene ID:
ENSAPLG00000016271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017003
15873488 - 15891147
17660