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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15884815_15885438_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15884815 - 15885438
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
ACTACCACAAAT
Flanking Amino Acid:
SAIHLIHDPQDFAEKLLKQL
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
72.7
44.5
Major BPS
66.1
0.4
1
73
31.5
Major PPT
80.8
0.69
0.8
73.8
36.9
Minor 5ss
42.6
-0.8
2.9
49.5
46.5
Minor BPS
47
-0.1
1.9
66.31
43.4

Associated Gene:

Gene:
SDAD1
Ensembl Gene ID:
ENSAPLG00000016271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017003
15873488 - 15891147
17660