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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15885509_15885965_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15885509 - 15885965
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGAGA
5'SS Class:
major
3'SS Sequence:
TCTTGCCATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCCAT
U12 Branch Point Sequence:
GTCTCCTTTACT
Flanking Amino Acid:
KLEKAMKVLRKHKKKSKPEV
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
65.7
41.7
Major BPS
62.2
0.3
1.4
72.5
43.5
Major PPT
76.2
0.59
0.9
70.2
35.4
Minor 5ss
25.7
-2.8
2.9
22.2
37.3
Minor BPS
73.5
0.82
1.6
85.19
41

Associated Gene:

Gene:
SDAD1
Ensembl Gene ID:
ENSAPLG00000016271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017003
15873488 - 15891147
17660