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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15886068_15886794_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15886068 - 15886794
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTGCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTCACCTGAGTC
Flanking Amino Acid:
ENQDSDSDSEDDTPTARDLM
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.2
90.9
28.7
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
64.4
0.33
1.1
64
37
Minor 5ss
37.1
-1.5
2.8
51.6
44.9
Minor BPS
51.4
0.02
1.7
64.09
41.6

Associated Gene:

Gene:
SDAD1
Ensembl Gene ID:
ENSAPLG00000016271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017003
15873488 - 15891147
17660