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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15887806_15889104_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15887806 - 15889104
Intron Length:
1299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTTTG
5'SS Class:
major
3'SS Sequence:
TGTTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTGTTTTATT
Flanking Amino Acid:
VMIELYRRNIWNDAKTVNVI
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
71.5
41.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
85.9
0.81
0.8
78.1
40.1
Minor 5ss
42.6
-0.8
3.1
54.1
44.6
Minor BPS
59.2
0.37
2
83.31
38.3

Associated Gene:

Gene:
SDAD1
Ensembl Gene ID:
ENSAPLG00000016271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017003
15873488 - 15891147
17660