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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15889206_15889296_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15889206 - 15889296
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATAATAAACG
Flanking Amino Acid:
AKHKNNKVNTMLQNFMYTML
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
80
0.75
1
78.6
31
Major PPT
81.5
0.71
0.7
81
30.3
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
46.6
-0.4
2.1
56.12
44.3

Associated Gene:

Gene:
SDAD1
Ensembl Gene ID:
ENSAPLG00000016271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017003
15873488 - 15891147
17660