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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15889369_15890063_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15889369 - 15890063
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCTGT
5'SS Class:
major
3'SS Sequence:
TCTCCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCAAAT
U12 Branch Point Sequence:
TCTCCTTTTACA
Flanking Amino Acid:
LRCHDKLLRKTLYTHIVTDI
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
72.5
39.9
Major BPS
62.1
0.3
1.2
67.3
37.8
Major PPT
88.3
0.86
0.7
83
25.5
Minor 5ss
47.3
-0.3
2.9
64.8
40.8
Minor BPS
63.8
0.43
1.6
72.64
39.2

Associated Gene:

Gene:
SDAD1
Ensembl Gene ID:
ENSAPLG00000016271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017003
15873488 - 15891147
17660