Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15962701_15963442_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15962701 - 15963442

Intron Length:

742

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGTGTG

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTTCCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATAAT

U12 Branch Point Sequence:

TATATAATGACA

Flanking Amino Acid:

SSYILESNRKVTKDRTADGH

Intron Amino Acid Position:

291

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

36.6

Major BPS

0.72

78.4

31.2

Major PPT

78.7

0.65

0.7

77.7

31.1

Minor 5ss

36.9

-1.5

3.2

48.2

47.9

Minor BPS

46.7

-0.2

1.9

62.16

37.1

Associated Gene:

Gene:

RUFY3

Ensembl Gene ID:

ENSAPLG00000015819

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017550

15932734 - 15966530

33797

ENSAPLT00000016546

15932734 - 15977169

44436