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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15968940_15971772_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15968940 - 15971772
Intron Length:
2833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAAGAGA
5'SS Class:
major
3'SS Sequence:
CTTGATGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTATTCCTAATT
Flanking Amino Acid:
QLEVEELSRQRSHLELELKR
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
59.4
41
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
75.6
0.58
1
68.1
42.1
Minor 5ss
26
-2.8
3
30.7
43
Minor BPS
68.7
0.67
1.6
85.26
34.8

Associated Gene:

Gene:
RUFY3
Ensembl Gene ID:
ENSAPLG00000015819
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016546
15932734 - 15977169
44436