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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15980813_15981026_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15980813 - 15981026
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TATTGTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
AGTCACTGAACG
Flanking Amino Acid:
AAMAKEGTRLQCGTIELFLN
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.4
1.3
70.2
37.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
73.9
0.54
0.9
66.4
40.4
Minor 5ss
30.5
-2.2
2.6
28.7
36.1
Minor BPS
51.5
-0
1.7
58.92
41.7

Associated Gene:

Gene:
GRSF1
Ensembl Gene ID:
ENSAPLG00000022561
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043871
15980729 - 15987920
7192