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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16033165_16033258_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16033165 - 16033258
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTAAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTAAAA
Flanking Amino Acid:
VQQNSEDDCEELTASQKSGG
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
75.7
29.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
65.9
0.36
1.1
61
42.7
Minor 5ss
43.3
-0.7
2.8
55.5
48.7
Minor BPS
66.3
0.51
1.5
76.26
34.1

Associated Gene:

Gene:
DCK
Ensembl Gene ID:
ENSAPLG00000012557
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013105
16031999 - 16036957
4959