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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16033453_16034595_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16033453 - 16034595
Intron Length:
1143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
GTTTACAGAACT
Flanking Amino Acid:
VFFERSVYSDRYIFAANLYE
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
71.4
41.2
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
81.5
0.71
0.9
75.8
38.1
Minor 5ss
45.7
-0.5
2.5
58.3
46.4
Minor BPS
55.6
0.26
1.9
80.52
40.2

Associated Gene:

Gene:
DCK
Ensembl Gene ID:
ENSAPLG00000012557
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013105
16031999 - 16036957
4959