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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16036362_16036836_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16036362 - 16036836
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TATTCCCATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTGTTTCTATT
Flanking Amino Acid:
HESWLQHRTLRTDFEFLQEI
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
75.5
35
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
76.8
0.6
0.9
71
34.6
Minor 5ss
41.1
-1
3.1
58.7
45.3
Minor BPS
47.6
-0.1
1.9
70.82
40.9

Associated Gene:

Gene:
DCK
Ensembl Gene ID:
ENSAPLG00000012557
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013105
16031999 - 16036957
4959