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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16125896_16175801_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16125896 - 16175801
Intron Length:
49906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTCACCTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTATTTTCACCT
Flanking Amino Acid:
ETSSSILKPLISPAAERVRF
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.5
0.66
0.8
73.4
31.4
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
49.6
0.05
1.8
69.21
41.8

Associated Gene:

Gene:
SLC4A4
Ensembl Gene ID:
ENSAPLG00000011271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021013
16075091 - 16276211
201121
ENSAPLT00000011918
16055353 - 16275185
219833
ENSAPLT00000044581
16075091 - 16274306
199216