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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16175938_16182414_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16175938 - 16182414
Intron Length:
6477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGCCCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
ACAACTTCAACA
Flanking Amino Acid:
GQEMEWKETARWIKFEEKVE
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
78.9
0.65
0.8
72.7
32.1
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
53.3
0.1
1.6
59.75
39.9

Associated Gene:

Gene:
SLC4A4
Ensembl Gene ID:
ENSAPLG00000011271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021013
16075091 - 16276211
201121
ENSAPLT00000011918
16055353 - 16275185
219833
ENSAPLT00000044581
16075091 - 16274306
199216