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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16215906_16224957_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16215906 - 16224957
Intron Length:
9052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TATGTTTTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTATCCTAAATG
Flanking Amino Acid:
GALTEVPVPTRFLFILLGPK
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
33.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
77.2
0.61
1
77.2
41.6
Minor 5ss
30.2
-2.3
3.3
39
46.2
Minor BPS
60.9
0.21
1.8
63.75
44.6

Associated Gene:

Gene:
SLC4A4
Ensembl Gene ID:
ENSAPLG00000011271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044581
16075091 - 16274306
199216
ENSAPLT00000021013
16075091 - 16276211
201121
ENSAPLT00000011918
16055353 - 16275185
219833