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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16228947_16233976_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16228947 - 16233976
Intron Length:
5030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCAGC
5'SS Class:
major
3'SS Sequence:
ATGTCTACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
TTCAGTAGAACT
Flanking Amino Acid:
LLGDATENMQGVLESFLGTA
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
68.3
42.9
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
69.4
0.44
0.9
62.7
37.9
Minor 5ss
36.1
-1.6
2.7
44.3
43.1
Minor BPS
44.5
-0.3
2.1
66.31
44.2

Associated Gene:

Gene:
SLC4A4
Ensembl Gene ID:
ENSAPLG00000011271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044581
16075091 - 16274306
199216
ENSAPLT00000021013
16075091 - 16276211
201121
ENSAPLT00000011918
16055353 - 16275185
219833