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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16238665_16243987_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16238665 - 16243987
Intron Length:
5323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAC
U12 Branch Point Sequence:
CTCTCAGTATTC
Flanking Amino Acid:
FSCACEPLGPDNSSLFNGTT
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
57.7
0.19
1.2
66.7
40
Major PPT
90
0.9
0.6
88.4
21.2
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
42.3
-0.6
2.3
54.59
44.1

Associated Gene:

Gene:
SLC4A4
Ensembl Gene ID:
ENSAPLG00000011271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021013
16075091 - 16276211
201121
ENSAPLT00000011918
16055353 - 16275185
219833
ENSAPLT00000044581
16075091 - 16274306
199216