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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16252670_16257100_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16252670 - 16257100
Intron Length:
4431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TCTCCCTTCACA
Flanking Amino Acid:
IVNRKEHKLKKGAGYHLDLF
Intron Amino Acid Position:
818

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
81
0.7
0.7
75.4
26.7
Minor 5ss
29.5
-2.4
3.4
39.1
46.7
Minor BPS
67.9
0.56
1.8
76.69
40.5

Associated Gene:

Gene:
SLC4A4
Ensembl Gene ID:
ENSAPLG00000011271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044581
16075091 - 16274306
199216
ENSAPLT00000021013
16075091 - 16276211
201121
ENSAPLT00000011918
16055353 - 16275185
219833