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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16263322_16264999_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16263322 - 16264999
Intron Length:
1678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTATCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATGC
Flanking Amino Acid:
MGVASLNGVQFMDRLKLLLM
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.2
0.72
0.9
74.6
39.7
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
51.9
0.04
2
70.85
40.8

Associated Gene:

Gene:
SLC4A4
Ensembl Gene ID:
ENSAPLG00000011271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044581
16075091 - 16274306
199216
ENSAPLT00000021013
16075091 - 16276211
201121
ENSAPLT00000011918
16055353 - 16275185
219833