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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_16265174_16267643_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16265174 - 16267643
Intron Length:
2470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
TCTGCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAAAAT
U12 Branch Point Sequence:
TGTATCTCAGTG
Flanking Amino Acid:
TVAAIIFPVMILALVAVRKA
Intron Amino Acid Position:
983

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
36.5
Major BPS
52.8
0.07
1.3
61.7
41.5
Major PPT
83.6
0.76
0.8
80.6
31.4
Minor 5ss
33.1
-1.9
3.5
45
45.5
Minor BPS
46.3
-0.4
1.8
52.95
42

Associated Gene:

Gene:
SLC4A4
Ensembl Gene ID:
ENSAPLG00000011271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044581
16075091 - 16274306
199216
ENSAPLT00000021013
16075091 - 16276211
201121
ENSAPLT00000011918
16055353 - 16275185
219833